J4_6GC8_009

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6GC8|1|A|C|1925, 6GC8|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GC8_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.4104

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6GC8|1|A|C|1833
6GC8|1|A|U|1834
6GC8|1|A|G|1835
*
6GC8|1|A|C|1905
6GC8|1|A|G|1906
*
6GC8|1|A|C|1924
6GC8|1|A|C|1925
6GC8|1|A|U|1926
6GC8|1|A|A|1927
6GC8|1|A|A|1928
6GC8|1|A|G|1929
6GC8|1|A|G|1930
6GC8|1|A|U|1931
6GC8|1|A|A|1932
6GC8|1|A|G|1933
*
6GC8|1|A|C|1967
6GC8|1|A|G|1968
6GC8|1|A|A|1969
6GC8|1|A|A|1970
6GC8|1|A|U|1971
6GC8|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2