J4_6GC8_010

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGG*CUUGAC*GGU*AGG

Length

18 nucleotides

Bulged bases

6GC8|1|A|A|2288, 6GC8|1|A|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC8|1|A|C|2285
6GC8|1|A|G|2286
6GC8|1|A|A|2287
6GC8|1|A|A|2288
6GC8|1|A|G|2289
6GC8|1|A|G|2290
*
6GC8|1|A|C|2342
6GC8|1|A|U|2343
6GC8|1|A|U|2344
6GC8|1|A|G|2345
6GC8|1|A|A|2346
6GC8|1|A|C|2347
*
6GC8|1|A|G|2370
6GC8|1|A|G|2371
6GC8|1|A|U|2372
*
6GC8|1|A|A|2381
6GC8|1|A|G|2382
6GC8|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27