J4_6GQ1_003
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6GQ1|1|1|A|1452, 6GQ1|1|1|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GQ1_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1671
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GQ1|1|1|C|1451
6GQ1|1|1|A|1452
6GQ1|1|1|A|1453
6GQ1|1|1|A|1454
6GQ1|1|1|U|1455
6GQ1|1|1|A|1456
6GQ1|1|1|U|1457
*
6GQ1|1|1|A|1475
6GQ1|1|1|G|1476
*
6GQ1|1|1|U|1877
6GQ1|1|1|G|1878
6GQ1|1|1|A|1879
6GQ1|1|1|U|1880
*
6GQ1|1|1|A|2352
6GQ1|1|1|G|2353
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain P
- 60S ribosomal protein L17-A
- Chain R
- 60S ribosomal protein L19-A
- Chain d
- 60S ribosomal protein L31-A
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