J4_6GQ1_006
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GACUG*CAUAGC*GUGAUU*AUUAAC
- Length
- 23 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQ1|1|1|G|2130
6GQ1|1|1|A|2131
6GQ1|1|1|C|2132
6GQ1|1|1|U|2133
6GQ1|1|1|G|2134
*
6GQ1|1|1|C|2146
6GQ1|1|1|A|2147
6GQ1|1|1|U|2148
6GQ1|1|1|A|2149
6GQ1|1|1|G|2150
6GQ1|1|1|C|2151
*
6GQ1|1|1|G|2185
6GQ1|1|1|U|2186
6GQ1|1|1|G|2187
6GQ1|1|1|A|2188
6GQ1|1|1|U|2189
6GQ1|1|1|U|2190
*
6GQ1|1|1|A|2317
6GQ1|1|1|U|2318
6GQ1|1|1|U|2319
6GQ1|1|1|A|2320
6GQ1|1|1|A|2321
6GQ1|1|1|C|2322
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain n
- 60S ribosomal protein L41-B
- Chain p
- 60S ribosomal protein L43-A
Coloring options: