J4_6GQ1_007
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6GQ1|1|1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GQ1_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1752
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GQ1|1|1|C|2192
6GQ1|1|1|U|2193
6GQ1|1|1|G|2194
*
6GQ1|1|1|C|2248
6GQ1|1|1|G|2249
*
6GQ1|1|1|C|2267
6GQ1|1|1|U|2268
6GQ1|1|1|U|2269
6GQ1|1|1|A|2270
6GQ1|1|1|A|2271
6GQ1|1|1|G|2272
6GQ1|1|1|G|2273
6GQ1|1|1|U|2274
6GQ1|1|1|A|2275
6GQ1|1|1|G|2276
*
6GQ1|1|1|U|2310
6GQ1|1|1|G|2311
6GQ1|1|1|A|2312
6GQ1|1|1|A|2313
6GQ1|1|1|U|2314
6GQ1|1|1|G|2315
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain n
- 60S ribosomal protein L41-B
Coloring options: