J4_6GQV_011
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AAG*CGAAAGU*ACCAUAAACUAUG*UU
- Length
- 25 nucleotides
- Bulged bases
- 6GQV|1|2|A|623, 6GQV|1|2|U|1029, 6GQV|1|2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQV|1|2|A|622
6GQV|1|2|A|623
6GQV|1|2|G|624
*
6GQV|1|2|C|975
6GQV|1|2|G|976
6GQV|1|2|A|977
6GQV|1|2|A|978
6GQV|1|2|A|979
6GQV|1|2|G|980
6GQV|1|2|U|981
*
6GQV|1|2|A|1020
6GQV|1|2|C|1021
6GQV|1|2|C|1022
6GQV|1|2|A|1023
6GQV|1|2|U|1024
6GQV|1|2|A|1025
6GQV|1|2|A|1026
6GQV|1|2|A|1027
6GQV|1|2|C|1028
6GQV|1|2|U|1029
6GQV|1|2|A|1030
6GQV|1|2|U|1031
6GQV|1|2|G|1032
*
6GQV|1|2|U|1103
6GQV|1|2|U|1104
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AB
- 40S ribosomal protein S11-A
- Chain AD
- 40S ribosomal protein S13
- Chain AE
- 40S ribosomal protein S14-B
- Chain AM
- 40S ribosomal protein S22-A
- Chain AN
- 40S ribosomal protein S23-A
- Chain AQ
- 40S ribosomal protein S26-B
- Chain n
- 60S ribosomal protein L41-B
- Chain p
- 60S ribosomal protein L43-A
Coloring options: