J4_6GSK_010

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSK_010 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0575

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6GSK|1|14|G|1772
6GSK|1|14|A|1773
6GSK|1|14|C|1774
6GSK|1|14|U|1775
6GSK|1|14|G|1776
*
6GSK|1|14|C|1788
6GSK|1|14|A|1789
6GSK|1|14|C|1790
6GSK|1|14|A|1791
6GSK|1|14|G|1792
*
6GSK|1|14|C|1827
6GSK|1|14|G|1828
6GSK|1|14|A|1829
6GSK|1|14|C|1830
*
6GSK|1|14|G|1975
6GSK|1|14|U|1976
6GSK|1|14|A|1977
6GSK|1|14|A|1978
6GSK|1|14|C|1979

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA