J4_6GSK_013

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGGGC*GAC*GGAAG*CGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|14|G|2642
6GSK|1|14|G|2643
6GSK|1|14|G|2644
6GSK|1|14|G|2645
6GSK|1|14|C|2646
*
6GSK|1|14|G|2674
6GSK|1|14|A|2675
6GSK|1|14|C|2676
*
6GSK|1|14|G|2731
6GSK|1|14|G|2732
6GSK|1|14|A|2733
6GSK|1|14|A|2734
6GSK|1|14|G|2735
*
6GSK|1|14|C|2769
6GSK|1|14|G|2770
6GSK|1|14|C|2771
6GSK|1|14|C|2772

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3