J4_6GSK_030
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- UGAUAUAG*CGC*GAGGUCGGCA*UGCCUAUCA
- Length
- 30 nucleotides
- Bulged bases
- 6GSK|1|3K|A|7, 6GSK|1|3K|U|8, 6GSK|1|3K|U|47, 6GSK|1|3K|C|48, 6GSK|1|3K|C|65
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSK|1|3K|U|3
6GSK|1|3K|G|4
6GSK|1|3K|A|5
6GSK|1|3K|U|6
6GSK|1|3K|A|7
6GSK|1|3K|U|8
6GSK|1|3K|A|9
6GSK|1|3K|G|10
*
6GSK|1|3K|C|25
6GSK|1|3K|G|26
6GSK|1|3K|C|27
*
6GSK|1|3K|G|43
6GSK|1|3K|A|44
6GSK|1|3K|G|45
6GSK|1|3K|G|46
6GSK|1|3K|U|47
6GSK|1|3K|C|48
6GSK|1|3K|G|49
6GSK|1|3K|G|50
6GSK|1|3K|C|51
6GSK|1|3K|A|52
*
6GSK|1|3K|U|62
6GSK|1|3K|G|63
6GSK|1|3K|C|64
6GSK|1|3K|C|65
6GSK|1|3K|U|66
6GSK|1|3K|A|67
6GSK|1|3K|U|68
6GSK|1|3K|C|69
6GSK|1|3K|A|70
Current chains
- Chain 3K
- tRNAThr
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2I
- 30S ribosomal protein S11
- Chain 6E
- 30S ribosomal protein S7
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