J4_6GSK_031
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- AUAUAG*CGC*GAGGUCG*CUAU
- Length
- 20 nucleotides
- Bulged bases
- 6GSK|1|3L|A|7, 6GSK|1|3L|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_13620.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6GSK|1|3L|A|5
6GSK|1|3L|U|6
6GSK|1|3L|A|7
6GSK|1|3L|U|8
6GSK|1|3L|A|9
6GSK|1|3L|G|10
*
6GSK|1|3L|C|25
6GSK|1|3L|G|26
6GSK|1|3L|C|27
*
6GSK|1|3L|G|43
6GSK|1|3L|A|44
6GSK|1|3L|G|45
6GSK|1|3L|G|46
6GSK|1|3L|U|47
6GSK|1|3L|C|48
6GSK|1|3L|G|49
*
6GSK|1|3L|C|65
6GSK|1|3L|U|66
6GSK|1|3L|A|67
6GSK|1|3L|U|68
Current chains
- Chain 3L
- tRNAThr
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2A
- 30S ribosomal protein S11
- Chain 62
- 30S ribosomal protein S7
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