J4_6GSL_020

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6GSL|1|1H|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GSL_020 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0712

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GSL|1|1H|G|1310
6GSL|1|1H|G|1311
6GSL|1|1H|U|1312
6GSL|1|1H|U|1313
6GSL|1|1H|C|1314
*
6GSL|1|1H|G|1338
6GSL|1|1H|G|1339
6GSL|1|1H|U|1340
6GSL|1|1H|U|1341
6GSL|1|1H|A|1342
6GSL|1|1H|G|1343
*
6GSL|1|1H|C|1404
6GSL|1|1H|U|1405
*
6GSL|1|1H|A|1597
6GSL|1|1H|C|1598
6GSL|1|1H|C|1599
6GSL|1|1H|C|1600
6GSL|1|1H|G|1601
6GSL|1|1H|U|1602
6GSL|1|1H|A|1603
6GSL|1|1H|C|1604

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34