J4_6GSM_003

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GUUAAAAAG*CGAAAG*CCAUAAACUAUG*UUC

Length

30 nucleotides

Bulged bases

6GSM|1|2|A|618, 6GSM|1|2|A|622, 6GSM|1|2|U|1023, 6GSM|1|2|A|1025, 6GSM|1|2|U|1028, 6GSM|1|2|U|1030

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|G|615
6GSM|1|2|U|616
6GSM|1|2|U|617
6GSM|1|2|A|618
6GSM|1|2|A|619
6GSM|1|2|A|620
6GSM|1|2|A|621
6GSM|1|2|A|622
6GSM|1|2|G|623
*
6GSM|1|2|C|974
6GSM|1|2|G|975
6GSM|1|2|A|976
6GSM|1|2|A|977
6GSM|1|2|A|978
6GSM|1|2|G|979
*
6GSM|1|2|C|1020
6GSM|1|2|C|1021
6GSM|1|2|A|1022
6GSM|1|2|U|1023
6GSM|1|2|A|1024
6GSM|1|2|A|1025
6GSM|1|2|A|1026
6GSM|1|2|C|1027
6GSM|1|2|U|1028
6GSM|1|2|A|1029
6GSM|1|2|U|1030
6GSM|1|2|G|1031
*
6GSM|1|2|U|1102
6GSM|1|2|U|1103
6GSM|1|2|C|1104

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

KLLA0F09812p

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain O

40S ribosomal protein S14

Chain W

40S ribosomal protein S22

Chain X

RPS23

Chain a

40S ribosomal protein S26

Chain h

eL41

Chain p

Eukaryotic translation initiation factor 3 subunit B

Chain q

Eukaryotic translation initiation factor 3 subunit C