J4_6GSN_001
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- GUGG*CGC*GAUGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 6GSN|1|1|G|9, 6GSN|1|1|U|45
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSN|1|1|G|7
6GSN|1|1|U|8
6GSN|1|1|G|9
6GSN|1|1|G|10
*
6GSN|1|1|C|25
6GSN|1|1|G|26
6GSN|1|1|C|27
*
6GSN|1|1|G|43
6GSN|1|1|A|44
6GSN|1|1|U|45
6GSN|1|1|G|46
6GSN|1|1|U|47
6GSN|1|1|C|48
6GSN|1|1|C|49
*
6GSN|1|1|G|65
6GSN|1|1|C|66
Current chains
- Chain 1
- tRNAi (75-MER)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain S
- KLLA0B01562p
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain l
- Eukaryotic translation initiation factor 2 subunit beta
- Chain m
- Eukaryotic translation initiation factor eIF-1
Coloring options: