J4_6GWT_002

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GWT_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1095

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6GWT|1|A|G|297
6GWT|1|A|G|298
6GWT|1|A|A|299
6GWT|1|A|A|300
6GWT|1|A|G|301
*
6GWT|1|A|C|316
6GWT|1|A|G|317
6GWT|1|A|C|318
6GWT|1|A|G|319
*
6GWT|1|A|C|323
6GWT|1|A|A|324
6GWT|1|A|G|325
*
6GWT|1|A|C|337
6GWT|1|A|G|338
6GWT|1|A|U|339
6GWT|1|A|A|340
6GWT|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24