J4_6GWT_015
3D structure
- PDB id
- 6GWT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6GWT|1|x|U|8, 6GWT|1|x|U|48, 6GWT|1|x|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GWT_015 not in the Motif Atlas
- Homologous match to J4_5HR7_002
- Geometric discrepancy: 0.2391
- The information below is about J4_5HR7_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6GWT|1|x|G|7
6GWT|1|x|U|8
6GWT|1|x|G|9
6GWT|1|x|G|10
*
6GWT|1|x|C|26
6GWT|1|x|G|27
6GWT|1|x|U|28
*
6GWT|1|x|A|44
6GWT|1|x|A|45
6GWT|1|x|G|46
6GWT|1|x|G|47
6GWT|1|x|U|48
6GWT|1|x|C|49
6GWT|1|x|G|50
*
6GWT|1|x|C|66
6GWT|1|x|C|67
Current chains
- Chain x
- fMet-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
- Chain v
- Peptide chain release factor RF1
Coloring options: