3D structure

PDB id
6GXP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6GXP_002 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.1111
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6GXP|1|A|G|297
6GXP|1|A|G|298
6GXP|1|A|A|299
6GXP|1|A|A|300
6GXP|1|A|G|301
*
6GXP|1|A|C|316
6GXP|1|A|G|317
6GXP|1|A|C|318
6GXP|1|A|G|319
*
6GXP|1|A|C|323
6GXP|1|A|A|324
6GXP|1|A|G|325
*
6GXP|1|A|C|337
6GXP|1|A|G|338
6GXP|1|A|U|339
6GXP|1|A|A|340
6GXP|1|A|C|341

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain U
50S ribosomal protein L24

Coloring options:


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