J4_6GZ3_001

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCUCCCC*GGGGCCGGG*CCACGCGCGC*GGCGGAGCGAGC

Length

40 nucleotides

Bulged bases

6GZ3|1|A2|U|967, 6GZ3|1|A2|C|968, 6GZ3|1|A2|C|1055, 6GZ3|1|A2|C|1220, 6GZ3|1|A2|G|1254, 6GZ3|1|A2|C|1255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|A2|G|965
6GZ3|1|A2|C|966
6GZ3|1|A2|U|967
6GZ3|1|A2|C|968
6GZ3|1|A2|U|969
6GZ3|1|A2|C|970
6GZ3|1|A2|C|971
6GZ3|1|A2|C|972
6GZ3|1|A2|C|973
*
6GZ3|1|A2|G|1050
6GZ3|1|A2|G|1051
6GZ3|1|A2|G|1052
6GZ3|1|A2|G|1053
6GZ3|1|A2|C|1054
6GZ3|1|A2|C|1055
6GZ3|1|A2|G|1056
6GZ3|1|A2|G|1057
6GZ3|1|A2|G|1058
*
6GZ3|1|A2|C|1219
6GZ3|1|A2|C|1220
6GZ3|1|A2|A|1221
6GZ3|1|A2|C|1222
6GZ3|1|A2|G|1223
6GZ3|1|A2|C|1224
6GZ3|1|A2|G|1225
6GZ3|1|A2|C|1226
6GZ3|1|A2|G|1227
6GZ3|1|A2|C|1228
*
6GZ3|1|A2|G|1248
6GZ3|1|A2|G|1249
6GZ3|1|A2|C|1250
6GZ3|1|A2|G|1251
6GZ3|1|A2|G|1252
6GZ3|1|A2|A|1253
6GZ3|1|A2|G|1254
6GZ3|1|A2|C|1255
6GZ3|1|A2|G|1256
6GZ3|1|A2|A|1257
6GZ3|1|A2|G|1258
6GZ3|1|A2|C|1259

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AF

ribosomal protein uL30