J4_6GZ3_007

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CGGG*CUCUUAAGGUAG*UGAAUG

Length

25 nucleotides

Bulged bases

6GZ3|1|A2|U|3789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|A2|C|3667
6GZ3|1|A2|U|3668
6GZ3|1|A2|G|3669
*
6GZ3|1|A2|C|3723
6GZ3|1|A2|G|3724
6GZ3|1|A2|G|3725
6GZ3|1|A2|G|3726
*
6GZ3|1|A2|C|3740
6GZ3|1|A2|U|3741
6GZ3|1|A2|C|3742
6GZ3|1|A2|U|3743
6GZ3|1|A2|U|3744
6GZ3|1|A2|A|3745
6GZ3|1|A2|A|3746
6GZ3|1|A2|G|3747
6GZ3|1|A2|G|3748
6GZ3|1|A2|U|3749
6GZ3|1|A2|A|3750
6GZ3|1|A2|G|3751
*
6GZ3|1|A2|U|3785
6GZ3|1|A2|G|3786
6GZ3|1|A2|A|3787
6GZ3|1|A2|A|3788
6GZ3|1|A2|U|3789
6GZ3|1|A2|G|3790

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

Ribosomal protein L8

Chain An

ribosomal protein eL41

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bv

Transfer RNA; tRNA