J4_6GZ5_002

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUCUCCC*GGGCCGGG*CCACGCGCGC*GGCGGAGCGAGC

Length

38 nucleotides

Bulged bases

6GZ5|1|A2|U|967, 6GZ5|1|A2|C|968, 6GZ5|1|A2|C|1055, 6GZ5|1|A2|C|1220, 6GZ5|1|A2|G|1254, 6GZ5|1|A2|C|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|G|965
6GZ5|1|A2|C|966
6GZ5|1|A2|U|967
6GZ5|1|A2|C|968
6GZ5|1|A2|U|969
6GZ5|1|A2|C|970
6GZ5|1|A2|C|971
6GZ5|1|A2|C|972
*
6GZ5|1|A2|G|1051
6GZ5|1|A2|G|1052
6GZ5|1|A2|G|1053
6GZ5|1|A2|C|1054
6GZ5|1|A2|C|1055
6GZ5|1|A2|G|1056
6GZ5|1|A2|G|1057
6GZ5|1|A2|G|1058
*
6GZ5|1|A2|C|1219
6GZ5|1|A2|C|1220
6GZ5|1|A2|A|1221
6GZ5|1|A2|C|1222
6GZ5|1|A2|G|1223
6GZ5|1|A2|C|1224
6GZ5|1|A2|G|1225
6GZ5|1|A2|C|1226
6GZ5|1|A2|G|1227
6GZ5|1|A2|C|1228
*
6GZ5|1|A2|G|1248
6GZ5|1|A2|G|1249
6GZ5|1|A2|C|1250
6GZ5|1|A2|G|1251
6GZ5|1|A2|G|1252
6GZ5|1|A2|A|1253
6GZ5|1|A2|G|1254
6GZ5|1|A2|C|1255
6GZ5|1|A2|G|1256
6GZ5|1|A2|A|1257
6GZ5|1|A2|G|1258
6GZ5|1|A2|C|1259

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AF

ribosomal protein uL30