J4_6GZ5_006

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6GZ5|1|A2|A|2675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|G|2597
6GZ5|1|A2|G|2598
*
6GZ5|1|A2|U|2616
6GZ5|1|A2|G|2617
6GZ5|1|A2|U|2618
6GZ5|1|A2|G|2619
6GZ5|1|A2|A|2620
6GZ5|1|A2|A|2621
*
6GZ5|1|A2|U|2671
6GZ5|1|A2|G|2672
6GZ5|1|A2|G|2673
6GZ5|1|A2|A|2674
6GZ5|1|A2|A|2675
6GZ5|1|A2|A|2676
6GZ5|1|A2|G|2677
*
6GZ5|1|A2|U|2697
6GZ5|1|A2|C|2698

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain AU

ribosomal protein eL22

Chain Ag

ribosomal protein eL34

Chain Ak

ribosomal protein eL38