J4_6GZ5_009
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 6GZ5|1|A2|A|4196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GZ5_009 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1945
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZ5|1|A2|C|4193
6GZ5|1|A2|U|4194
6GZ5|1|A2|A|4195
6GZ5|1|A2|A|4196
6GZ5|1|A2|G|4197
*
6GZ5|1|A2|U|4251
6GZ5|1|A2|U|4252
6GZ5|1|A2|G|4253
6GZ5|1|A2|A|4254
6GZ5|1|A2|U|4255
*
6GZ5|1|A2|A|4279
6GZ5|1|A2|C|4280
6GZ5|1|A2|C|4281
*
6GZ5|1|A2|G|4290
6GZ5|1|A2|G|4291
6GZ5|1|A2|G|4292
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AD
- ribosomal protein uL18
- Chain AT
- ribosomal protein eL21
- Chain Ab
- ribosomal protein eL29
- Chain Ao
- ribosomal protein eL42
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