J4_6GZ5_014
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 6GZ5|1|Bw|U|8, 6GZ5|1|Bw|U|47, 6GZ5|1|Bw|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GZ5_014 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.2457
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6GZ5|1|Bw|U|7
6GZ5|1|Bw|U|8
6GZ5|1|Bw|A|9
6GZ5|1|Bw|G|10
*
6GZ5|1|Bw|C|25
6GZ5|1|Bw|G|26
6GZ5|1|Bw|C|27
*
6GZ5|1|Bw|G|43
6GZ5|1|Bw|A|44
6GZ5|1|Bw|G|45
6GZ5|1|Bw|G|46
6GZ5|1|Bw|U|47
6GZ5|1|Bw|C|48
6GZ5|1|Bw|C|49
*
6GZ5|1|Bw|G|65
6GZ5|1|Bw|A|66
Current chains
- Chain Bw
- E/E-site-tRNA
Nearby chains
- Chain Ao
- ribosomal protein eL42
- Chain BO
- ribosomal protein uS11
Coloring options: