J4_6GZQ_003

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAG*CGUAG*CGAGU*GCGCAAACGGCCCGCACGCGGGCCGAAAAG

Length

44 nucleotides

Bulged bases

6GZQ|1|A1|C|688, 6GZQ|1|A1|A|701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZQ|1|A1|C|626
6GZQ|1|A1|G|627
6GZQ|1|A1|A|628
6GZQ|1|A1|G|629
*
6GZQ|1|A1|C|651
6GZQ|1|A1|G|652
6GZQ|1|A1|U|653
6GZQ|1|A1|A|654
6GZQ|1|A1|G|655
*
6GZQ|1|A1|C|662
6GZQ|1|A1|G|663
6GZQ|1|A1|A|664
6GZQ|1|A1|G|665
6GZQ|1|A1|U|666
*
6GZQ|1|A1|G|676
6GZQ|1|A1|C|677
6GZQ|1|A1|G|678
6GZQ|1|A1|C|679
6GZQ|1|A1|A|680
6GZQ|1|A1|A|681
6GZQ|1|A1|A|682
6GZQ|1|A1|C|683
6GZQ|1|A1|G|684
6GZQ|1|A1|G|685
6GZQ|1|A1|C|686
6GZQ|1|A1|C|687
6GZQ|1|A1|C|688
6GZQ|1|A1|G|689
6GZQ|1|A1|C|690
6GZQ|1|A1|A|691
6GZQ|1|A1|C|692
6GZQ|1|A1|G|693
6GZQ|1|A1|C|694
6GZQ|1|A1|G|695
6GZQ|1|A1|G|696
6GZQ|1|A1|G|697
6GZQ|1|A1|C|698
6GZQ|1|A1|C|699
6GZQ|1|A1|G|700
6GZQ|1|A1|A|701
6GZQ|1|A1|A|702
6GZQ|1|A1|A|703
6GZQ|1|A1|A|704
6GZQ|1|A1|G|705

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain K1

50S ribosomal protein L15

Chain d1

50S ribosomal protein L35