J4_6GZQ_004

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAUAAA*UC*GCGCG*CGG

Length

17 nucleotides

Bulged bases

6GZQ|1|A1|G|1319, 6GZQ|1|A1|A|1320, 6GZQ|1|A1|U|1321, 6GZQ|1|A1|A|1322, 6GZQ|1|A1|C|1695, 6GZQ|1|A1|G|1696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZQ|1|A1|C|1318
6GZQ|1|A1|G|1319
6GZQ|1|A1|A|1320
6GZQ|1|A1|U|1321
6GZQ|1|A1|A|1322
6GZQ|1|A1|A|1323
6GZQ|1|A1|A|1324
*
6GZQ|1|A1|U|1342
6GZQ|1|A1|C|1343
*
6GZQ|1|A1|G|1694
6GZQ|1|A1|C|1695
6GZQ|1|A1|G|1696
6GZQ|1|A1|C|1697
6GZQ|1|A1|G|1698
*
6GZQ|1|A1|C|2032
6GZQ|1|A1|G|2033
6GZQ|1|A1|G|2034

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17

Chain R1

50S ribosomal protein L22

Chain a1

50S ribosomal protein L32