J4_6GZQ_007

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6GZQ|1|A1|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZQ_007 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.314

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|G|1492
6GZQ|1|A1|A|1493
6GZQ|1|A1|C|1494
*
6GZQ|1|A1|G|1515
6GZQ|1|A1|C|1516
*
6GZQ|1|A1|G|1573
6GZQ|1|A1|G|1574
*
6GZQ|1|A1|C|1595
6GZQ|1|A1|C|1596

Current chains

Chain A1

23S ribosomal RNA

Nearby chains