J4_6GZQ_012

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAGUAACGCG*CGUC*GUAG*CC

Length

20 nucleotides

Bulged bases

6GZQ|1|A2|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZQ|1|A2|G|108
6GZQ|1|A2|A|109
6GZQ|1|A2|G|110
6GZQ|1|A2|U|111
6GZQ|1|A2|A|112
6GZQ|1|A2|A|113
6GZQ|1|A2|C|114
6GZQ|1|A2|G|115
6GZQ|1|A2|C|116
6GZQ|1|A2|G|117
*
6GZQ|1|A2|C|232
6GZQ|1|A2|G|233
6GZQ|1|A2|U|234
6GZQ|1|A2|C|235
*
6GZQ|1|A2|G|281
6GZQ|1|A2|U|282
6GZQ|1|A2|A|283
6GZQ|1|A2|G|284
*
6GZQ|1|A2|C|306
6GZQ|1|A2|C|307

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

30S ribosomal protein S12

Chain P2

30S ribosomal protein S16

Chain Q2

30S ribosomal protein S17