J4_6GZQ_014

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG

Length

30 nucleotides

Bulged bases

6GZQ|1|A2|A|555, 6GZQ|1|A2|G|559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZQ|1|A2|C|552
6GZQ|1|A2|G|553
6GZQ|1|A2|U|554
6GZQ|1|A2|A|555
6GZQ|1|A2|A|556
6GZQ|1|A2|A|557
6GZQ|1|A2|G|558
6GZQ|1|A2|G|559
6GZQ|1|A2|G|560
*
6GZQ|1|A2|C|747
6GZQ|1|A2|G|748
6GZQ|1|A2|A|749
6GZQ|1|A2|A|750
6GZQ|1|A2|A|751
6GZQ|1|A2|G|752
*
6GZQ|1|A2|C|793
6GZQ|1|A2|C|794
6GZQ|1|A2|C|795
6GZQ|1|A2|U|796
6GZQ|1|A2|A|797
6GZQ|1|A2|A|798
6GZQ|1|A2|A|799
6GZQ|1|A2|C|800
6GZQ|1|A2|G|801
6GZQ|1|A2|A|802
6GZQ|1|A2|U|803
6GZQ|1|A2|G|804
*
6GZQ|1|A2|C|856
6GZQ|1|A2|C|857
6GZQ|1|A2|G|858

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain H2

30S ribosomal protein S8

Chain L2

30S ribosomal protein S12

Chain O2

30S ribosomal protein S15

Chain Q2

30S ribosomal protein S17