J4_6GZQ_022
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*CGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6GZQ_022 not in the Motif Atlas
- Homologous match to J4_4WF9_009
- Geometric discrepancy: 0.1584
- The information below is about J4_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GZQ|1|A1|G|2657
6GZQ|1|A1|G|2658
6GZQ|1|A1|G|2659
6GZQ|1|A1|C|2660
*
6GZQ|1|A1|G|2688
6GZQ|1|A1|A|2689
6GZQ|1|A1|C|2690
*
6GZQ|1|A1|G|2746
6GZQ|1|A1|G|2747
6GZQ|1|A1|A|2748
6GZQ|1|A1|A|2749
6GZQ|1|A1|G|2750
*
6GZQ|1|A1|C|2784
6GZQ|1|A1|G|2785
6GZQ|1|A1|C|2786
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L3
- Chain I1
- 50S ribosomal protein L13
- Chain J1
- 50S ribosomal protein L14
Coloring options: