J4_6GZQ_023

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AAGAGG*CCAUGUG*CAAAGG*CCGCUU

Length

25 nucleotides

Bulged bases

6GZQ|1|A2|C|172, 6GZQ|1|A2|U|174, 6GZQ|1|A2|A|203, 6GZQ|1|A2|U|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZQ|1|A2|A|134
6GZQ|1|A2|A|135
6GZQ|1|A2|G|136
6GZQ|1|A2|A|137
6GZQ|1|A2|G|138
6GZQ|1|A2|G|139
*
6GZQ|1|A2|C|171
6GZQ|1|A2|C|172
6GZQ|1|A2|A|173
6GZQ|1|A2|U|174
6GZQ|1|A2|G|175
6GZQ|1|A2|U|176
6GZQ|1|A2|G|177
*
6GZQ|1|A2|C|200
6GZQ|1|A2|A|201
6GZQ|1|A2|A|202
6GZQ|1|A2|A|203
6GZQ|1|A2|G|204
6GZQ|1|A2|G|205
*
6GZQ|1|A2|C|213
6GZQ|1|A2|C|214
6GZQ|1|A2|G|215
6GZQ|1|A2|C|216
6GZQ|1|A2|U|217
6GZQ|1|A2|U|218

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain T2

30S ribosomal protein S20