J4_6H4N_013

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

6H4N|1|a|C|576, 6H4N|1|a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6H4N_013 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0636

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

6H4N|1|a|G|575
6H4N|1|a|C|576
6H4N|1|a|G|577
*
6H4N|1|a|C|764
6H4N|1|a|G|765
6H4N|1|a|A|766
6H4N|1|a|A|767
6H4N|1|a|A|768
6H4N|1|a|G|769
*
6H4N|1|a|C|810
6H4N|1|a|C|811
6H4N|1|a|G|812
6H4N|1|a|U|813
6H4N|1|a|A|814
6H4N|1|a|A|815
6H4N|1|a|A|816
6H4N|1|a|C|817
6H4N|1|a|G|818
6H4N|1|a|A|819
6H4N|1|a|U|820
6H4N|1|a|G|821
*
6H4N|1|a|C|879
6H4N|1|a|C|880

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain h

30S ribosomal protein S8

Chain l

30S ribosomal protein S12

Chain o

30S ribosomal protein S15

Chain q

30S ribosomal protein S17

Chain u

30S ribosomal protein S21