Loop J4_6HHQ

3D structure

PDB id: 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of compound C45 bound to the yeast 80S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: CUUGU*AAAUAACGAUACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAG*CGAGGAACAAU*AUAG
Length: 64 nucleotides
Bulged bases: 6HHQ|1|A|C|495, 6HHQ|1|A|A|506, 6HHQ|1|A|A|541, 6HHQ|1|A|A|544
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HHQ|1|A|C|31
6HHQ|1|A|U|32
6HHQ|1|A|U|33
6HHQ|1|A|G|34
6HHQ|1|A|U|35
*
6HHQ|1|A|A|473
6HHQ|1|A|A|474
6HHQ|1|A|A|475
6HHQ|1|A|U|476
6HHQ|1|A|A|477
6HHQ|1|A|A|478
6HHQ|1|A|C|479
6HHQ|1|A|G|480
6HHQ|1|A|A|481
6HHQ|1|A|U|482
6HHQ|1|A|A|483
6HHQ|1|A|C|484
6HHQ|1|A|A|485
6HHQ|1|A|G|486
6HHQ|1|A|G|487
6HHQ|1|A|G|488
6HHQ|1|A|C|489
6HHQ|1|A|C|490
6HHQ|1|A|C|491
6HHQ|1|A|A|492
6HHQ|1|A|U|493
6HHQ|1|A|U|494
6HHQ|1|A|C|495
6HHQ|1|A|G|496
6HHQ|1|A|G|497
6HHQ|1|A|G|498
6HHQ|1|A|U|499
6HHQ|1|A|C|500
6HHQ|1|A|U|501
6HHQ|1|A|U|502
6HHQ|1|A|G|503
6HHQ|1|A|U|504
6HHQ|1|A|A|505
6HHQ|1|A|A|506
6HHQ|1|A|U|507
6HHQ|1|A|U|508
6HHQ|1|A|G|509
6HHQ|1|A|G|510
6HHQ|1|A|A|511
6HHQ|1|A|A|512
6HHQ|1|A|U|513
6HHQ|1|A|G|514
6HHQ|1|A|A|515
6HHQ|1|A|G|516
*
6HHQ|1|A|C|536
6HHQ|1|A|G|537
6HHQ|1|A|A|538
6HHQ|1|A|G|539
6HHQ|1|A|G|540
6HHQ|1|A|A|541
6HHQ|1|A|A|542
6HHQ|1|A|C|543
6HHQ|1|A|A|544
6HHQ|1|A|A|545
6HHQ|1|A|U|546
*
6HHQ|1|A|A|592
6HHQ|1|A|U|593
6HHQ|1|A|A|594
6HHQ|1|A|G|595

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain K: 40S ribosomal protein S9-A
Chain Y: 40S ribosomal protein S23-A
Chain f: 40S ribosomal protein S30-A

J4_6HHQ_010