3D structure

PDB id
6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound C45 bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUG*CG*CUUAAGGUAG*UGAAUG
Length
21 nucleotides
Bulged bases
6HHQ|1|AR|U|2269, 6HHQ|1|AR|U|2314
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6HHQ_019 not in the Motif Atlas
Homologous match to J4_8P9A_018
Geometric discrepancy: 0.0696
The information below is about J4_8P9A_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6HHQ|1|AR|C|2192
6HHQ|1|AR|U|2193
6HHQ|1|AR|G|2194
*
6HHQ|1|AR|C|2248
6HHQ|1|AR|G|2249
*
6HHQ|1|AR|C|2267
6HHQ|1|AR|U|2268
6HHQ|1|AR|U|2269
6HHQ|1|AR|A|2270
6HHQ|1|AR|A|2271
6HHQ|1|AR|G|2272
6HHQ|1|AR|G|2273
6HHQ|1|AR|U|2274
6HHQ|1|AR|A|2275
6HHQ|1|AR|G|2276
*
6HHQ|1|AR|U|2310
6HHQ|1|AR|G|2311
6HHQ|1|AR|A|2312
6HHQ|1|AR|A|2313
6HHQ|1|AR|U|2314
6HHQ|1|AR|G|2315

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain CD
60S ribosomal protein L2-A
Chain DP
60S ribosomal protein L41-B
Chain sR
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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