J4_6I0Y_002

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I0Y_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0701

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6I0Y|1|A|G|297
6I0Y|1|A|G|298
6I0Y|1|A|A|299
6I0Y|1|A|A|300
6I0Y|1|A|G|301
*
6I0Y|1|A|C|316
6I0Y|1|A|G|317
6I0Y|1|A|C|318
6I0Y|1|A|G|319
*
6I0Y|1|A|C|323
6I0Y|1|A|A|324
6I0Y|1|A|G|325
*
6I0Y|1|A|C|337
6I0Y|1|A|G|338
6I0Y|1|A|U|339
6I0Y|1|A|A|340
6I0Y|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain h

50S ribosomal protein L24