J4_6I0Y_009

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6I0Y|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I0Y_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1027

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6I0Y|1|A|C|1833
6I0Y|1|A|U|1834
6I0Y|1|A|G|1835
*
6I0Y|1|A|C|1905
6I0Y|1|A|G|1906
*
6I0Y|1|A|C|1924
6I0Y|1|A|C|1925
6I0Y|1|A|U|1926
6I0Y|1|A|A|1927
6I0Y|1|A|A|1928
6I0Y|1|A|G|1929
6I0Y|1|A|G|1930
6I0Y|1|A|U|1931
6I0Y|1|A|A|1932
6I0Y|1|A|G|1933
*
6I0Y|1|A|C|1967
6I0Y|1|A|G|1968
6I0Y|1|A|A|1969
6I0Y|1|A|A|1970
6I0Y|1|A|U|1971
6I0Y|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain V

Transfer RNA; tRNA