J4_6I0Y_012

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAG*CAC*GGGGUCG*UC

Length

16 nucleotides

Bulged bases

6I0Y|1|V|U|8, 6I0Y|1|V|U|47, 6I0Y|1|V|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I0Y_012 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.2778

The information below is about J4_8VU0_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

6I0Y|1|V|G|7
6I0Y|1|V|U|8
6I0Y|1|V|A|9
6I0Y|1|V|G|10
*
6I0Y|1|V|C|25
6I0Y|1|V|A|26
6I0Y|1|V|C|27
*
6I0Y|1|V|G|43
6I0Y|1|V|G|44
6I0Y|1|V|G|45
6I0Y|1|V|G|46
6I0Y|1|V|U|47
6I0Y|1|V|C|48
6I0Y|1|V|G|49
*
6I0Y|1|V|U|65
6I0Y|1|V|C|66

Current chains

Chain V

Proline tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S ribosomal protein L16