J4_6I7V_015

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6I7V|1|CA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7V_015 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.131

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6I7V|1|CA|C|1833
6I7V|1|CA|U|1834
6I7V|1|CA|G|1835
*
6I7V|1|CA|C|1905
6I7V|1|CA|G|1906
*
6I7V|1|CA|C|1924
6I7V|1|CA|C|1925
6I7V|1|CA|U|1926
6I7V|1|CA|A|1927
6I7V|1|CA|A|1928
6I7V|1|CA|G|1929
6I7V|1|CA|G|1930
6I7V|1|CA|U|1931
6I7V|1|CA|A|1932
6I7V|1|CA|G|1933
*
6I7V|1|CA|C|1967
6I7V|1|CA|G|1968
6I7V|1|CA|A|1969
6I7V|1|CA|A|1970
6I7V|1|CA|U|1971
6I7V|1|CA|G|1972

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2