J4_6I7V_020

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6I7V|1|DA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7V_020 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.0897

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6I7V|1|DA|C|601
6I7V|1|DA|A|602
6I7V|1|DA|A|603
6I7V|1|DA|G|604
*
6I7V|1|DA|C|624
6I7V|1|DA|G|625
6I7V|1|DA|A|626
6I7V|1|DA|A|627
6I7V|1|DA|G|628
*
6I7V|1|DA|C|635
6I7V|1|DA|G|636
6I7V|1|DA|A|637
6I7V|1|DA|G|638
*
6I7V|1|DA|C|650
6I7V|1|DA|G|651
6I7V|1|DA|U|652
6I7V|1|DA|U|653
6I7V|1|DA|A|654
6I7V|1|DA|A|655
6I7V|1|DA|G|656

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15