J4_6I7V_033

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6I7V|1|CA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7V_033 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1819

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6I7V|1|CA|G|1310
6I7V|1|CA|G|1311
6I7V|1|CA|U|1312
6I7V|1|CA|U|1313
6I7V|1|CA|C|1314
*
6I7V|1|CA|G|1338
6I7V|1|CA|G|1339
6I7V|1|CA|U|1340
6I7V|1|CA|G|1341
6I7V|1|CA|A|1342
6I7V|1|CA|G|1343
*
6I7V|1|CA|C|1404
6I7V|1|CA|U|1405
*
6I7V|1|CA|A|1597
6I7V|1|CA|A|1598
6I7V|1|CA|U|1599
6I7V|1|CA|C|1600
6I7V|1|CA|G|1601
6I7V|1|CA|U|1602
6I7V|1|CA|A|1603
6I7V|1|CA|C|1604

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CU

50S ribosomal protein L23