J4_6I9R_004

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6I9R|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I9R_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1696

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6I9R|1|A|C|2544
6I9R|1|A|U|2545
6I9R|1|A|G|2546
*
6I9R|1|A|C|2569
6I9R|1|A|C|2570
*
6I9R|1|A|G|2587
6I9R|1|A|C|2588
6I9R|1|A|A|2589
6I9R|1|A|A|2590
6I9R|1|A|A|2591
6I9R|1|A|G|2592
6I9R|1|A|G|2593
6I9R|1|A|U|2594
6I9R|1|A|A|2595
6I9R|1|A|G|2596
*
6I9R|1|A|U|2630
6I9R|1|A|G|2631
6I9R|1|A|A|2632
6I9R|1|A|A|2633
6I9R|1|A|U|2634
6I9R|1|A|G|2635

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial