J4_6JXM_001

3D structure

PDB id

6JXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of phi29 pRNA domain II

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GUAG*CAC*GGGGUCG*UC

Length

16 nucleotides

Bulged bases

6JXM|1|B|U|8, 6JXM|1|B|U|68, 6JXM|1|B|C|69

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

6JXM|1|B|G|7
6JXM|1|B|U|8
6JXM|1|B|A|9
6JXM|1|B|G|10
*
6JXM|1|B|C|24
6JXM|1|B|A|25
6JXM|1|B|C|26
*
6JXM|1|B|G|64
6JXM|1|B|G|65
6JXM|1|B|G|66
6JXM|1|B|G|67
6JXM|1|B|U|68
6JXM|1|B|C|69
6JXM|1|B|G|70
*
6JXM|1|B|U|86
6JXM|1|B|C|87

Current chains

Chain B

RNA (97-mer)

Nearby chains