J4_6LQM_006

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6LQM|1|2|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|G|2618
6LQM|1|2|G|2619
*
6LQM|1|2|U|2637
6LQM|1|2|G|2638
6LQM|1|2|U|2639
6LQM|1|2|G|2640
6LQM|1|2|A|2641
6LQM|1|2|A|2642
*
6LQM|1|2|U|2692
6LQM|1|2|G|2693
6LQM|1|2|G|2694
6LQM|1|2|A|2695
6LQM|1|2|A|2696
6LQM|1|2|A|2697
6LQM|1|2|G|2698
*
6LQM|1|2|U|2718
6LQM|1|2|C|2719

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38

Chain a

60S ribosomal protein L19

Chain d

60S ribosomal protein L22