J4_6LSS_002

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6LSS|1|2|A|218, 6LSS|1|2|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|C|196
6LSS|1|2|A|197
6LSS|1|2|A|198
6LSS|1|2|G|199
*
6LSS|1|2|C|215
6LSS|1|2|C|216
6LSS|1|2|C|217
6LSS|1|2|A|218
6LSS|1|2|G|219
6LSS|1|2|C|220
6LSS|1|2|C|221
6LSS|1|2|C|222
*
6LSS|1|2|G|226
6LSS|1|2|A|227
6LSS|1|2|C|228
*
6LSS|1|2|G|240
6LSS|1|2|G|241
6LSS|1|2|U|242
6LSS|1|2|A|243
6LSS|1|2|G|244

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26