J4_6LSS_004

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6LSS|1|2|A|2366, 6LSS|1|2|U|2369, 6LSS|1|2|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|OMC|2365
6LSS|1|2|A|2366
6LSS|1|2|A|2367
6LSS|1|2|A|2368
6LSS|1|2|U|2369
6LSS|1|2|A|2370
6LSS|1|2|U|2371
*
6LSS|1|2|A|2389
6LSS|1|2|G|2390
6LSS|1|2|G|2391
*
6LSS|1|2|C|2824
6LSS|1|2|A|2825
6LSS|1|2|U|2826
6LSS|1|2|G|2827
6LSS|1|2|U|2828
6LSS|1|2|U|2829
*
6LSS|1|2|A|3856
6LSS|1|2|G|3857

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain 9

Zinc finger protein 593

Chain Y

60S ribosomal protein L17

Chain a

60S ribosomal protein L19

Chain j

60S ribosomal protein L31