J4_6LSS_006

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6LSS|1|2|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|G|2618
6LSS|1|2|G|2619
*
6LSS|1|2|U|2637
6LSS|1|2|G|2638
6LSS|1|2|U|2639
6LSS|1|2|G|2640
6LSS|1|2|A|2641
6LSS|1|2|A|2642
*
6LSS|1|2|U|2692
6LSS|1|2|G|2693
6LSS|1|2|G|2694
6LSS|1|2|A|2695
6LSS|1|2|A|2696
6LSS|1|2|A|2697
6LSS|1|2|G|2698
*
6LSS|1|2|U|2718
6LSS|1|2|C|2719

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38

Chain a

60S ribosomal protein L19

Chain d

60S ribosomal protein L22