J4_6MEC_001

3D structure

PDB id

6MEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a group II intron retroelement after DNA integration

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGA*UG*CUUC*GAUAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MEC|1|A|C|141
6MEC|1|A|G|142
6MEC|1|A|A|143
*
6MEC|1|A|U|154
6MEC|1|A|G|155
*
6MEC|1|A|C|182
6MEC|1|A|U|183
6MEC|1|A|U|184
6MEC|1|A|C|185
*
6MEC|1|A|G|199
6MEC|1|A|A|200
6MEC|1|A|U|201
6MEC|1|A|A|202
6MEC|1|A|G|203

Current chains

Chain A

T.el4h RNA

Nearby chains

Chain C

Maturase reverse transcriptase