J4_6MEC_002

3D structure

PDB id

6MEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a group II intron retroelement after DNA integration

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCACAGACCAAC*GAG*CAAA*UC

Length

22 nucleotides

Bulged bases

6MEC|1|A|G|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MEC|1|A|G|257
6MEC|1|A|U|258
6MEC|1|A|C|259
6MEC|1|A|A|260
6MEC|1|A|C|261
6MEC|1|A|A|262
6MEC|1|A|G|263
6MEC|1|A|A|264
6MEC|1|A|C|265
6MEC|1|A|C|266
6MEC|1|A|A|267
6MEC|1|A|A|268
6MEC|1|A|C|269
*
6MEC|1|A|G|293
6MEC|1|A|A|294
6MEC|1|A|G|295
*
6MEC|1|A|C|305
6MEC|1|A|A|306
6MEC|1|A|A|307
6MEC|1|A|A|308
*
6MEC|1|A|U|357
6MEC|1|A|C|358

Current chains

Chain A

T.el4h RNA

Nearby chains

Chain B

Sense Target DNA

Chain C

Maturase reverse transcriptase