J4_6MEC_003

3D structure

PDB id

6MEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a group II intron retroelement after DNA integration

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAUGC*GAUAG*CGC*GAG

Length

18 nucleotides

Bulged bases

6MEC|1|A|U|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MEC|1|A|C|494
6MEC|1|A|G|495
6MEC|1|A|A|496
6MEC|1|A|A|497
6MEC|1|A|U|498
6MEC|1|A|G|499
6MEC|1|A|C|500
*
6MEC|1|A|G|518
6MEC|1|A|A|519
6MEC|1|A|U|520
6MEC|1|A|A|521
6MEC|1|A|G|522
*
6MEC|1|A|C|551
6MEC|1|A|G|552
6MEC|1|A|C|553
*
6MEC|1|A|G|562
6MEC|1|A|A|563
6MEC|1|A|G|564

Current chains

Chain A

T.el4h RNA

Nearby chains