J4_6MPI_001
3D structure
- PDB id
- 6MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- CUGG*CUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAAC*GGUAAUAG*CGAG
- Length
- 55 nucleotides
- Bulged bases
- 6MPI|1|A|A|412, 6MPI|1|A|G|413, 6MPI|1|A|A|414, 6MPI|1|A|A|415, 6MPI|1|A|G|416, 6MPI|1|A|C|417, 6MPI|1|A|U|420, 6MPI|1|A|U|421, 6MPI|1|A|C|422, 6MPI|1|A|A|432, 6MPI|1|A|C|433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MPI|1|A|C|36
6MPI|1|A|U|37
6MPI|1|A|G|38
6MPI|1|A|G|39
*
6MPI|1|A|C|403
6MPI|1|A|U|404
6MPI|1|A|U|405
6MPI|1|A|G|406
6MPI|1|A|G|407
6MPI|1|A|A|408
6MPI|1|A|G|409
6MPI|1|A|G|410
6MPI|1|A|A|411
6MPI|1|A|A|412
6MPI|1|A|G|413
6MPI|1|A|A|414
6MPI|1|A|A|415
6MPI|1|A|G|416
6MPI|1|A|C|417
6MPI|1|A|C|418
6MPI|1|A|C|419
6MPI|1|A|U|420
6MPI|1|A|U|421
6MPI|1|A|C|422
6MPI|1|A|G|423
6MPI|1|A|G|424
6MPI|1|A|G|425
6MPI|1|A|G|426
6MPI|1|A|U|427
6MPI|1|A|G|428
6MPI|1|A|U|429
6MPI|1|A|A|430
6MPI|1|A|A|431
6MPI|1|A|A|432
6MPI|1|A|C|433
6MPI|1|A|U|434
6MPI|1|A|C|435
6MPI|1|A|C|436
6MPI|1|A|U|437
6MPI|1|A|G|438
6MPI|1|A|A|439
6MPI|1|A|A|440
6MPI|1|A|C|442
*
6MPI|1|A|G|492
6MPI|1|A|G|494
6MPI|1|A|U|495
6MPI|1|A|A|496
6MPI|1|A|A|497
6MPI|1|A|U|498
6MPI|1|A|A|499
6MPI|1|A|G|500
*
6MPI|1|A|C|545
6MPI|1|A|G|546
6MPI|1|A|A|547
6MPI|1|A|G|548
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: