J4_6MTB_004

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6MTB|1|5|C|216, 6MTB|1|5|C|217, 6MTB|1|5|A|218, 6MTB|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTB|1|5|C|196
6MTB|1|5|A|197
6MTB|1|5|A|198
6MTB|1|5|G|199
*
6MTB|1|5|C|215
6MTB|1|5|C|216
6MTB|1|5|C|217
6MTB|1|5|A|218
6MTB|1|5|G|219
6MTB|1|5|C|220
6MTB|1|5|C|221
6MTB|1|5|C|222
*
6MTB|1|5|G|226
6MTB|1|5|A|227
6MTB|1|5|C|228
*
6MTB|1|5|G|240
6MTB|1|5|G|241
6MTB|1|5|U|242
6MTB|1|5|A|243
6MTB|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26