J4_6MTB_015
3D structure
- PDB id
- 6MTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUAG*CAUC*GAGGGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 6MTB|1|4|U|8, 6MTB|1|4|U|47, 6MTB|1|4|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6MTB_015 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.3071
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6MTB|1|4|A|7
6MTB|1|4|U|8
6MTB|1|4|A|9
6MTB|1|4|G|10
*
6MTB|1|4|C|25
6MTB|1|4|A|26
6MTB|1|4|U|27
6MTB|1|4|C|28
*
6MTB|1|4|G|42
6MTB|1|4|A|43
6MTB|1|4|G|44
6MTB|1|4|G|45
6MTB|1|4|G|46
6MTB|1|4|U|47
6MTB|1|4|C|48
6MTB|1|4|C|49
*
6MTB|1|4|G|65
6MTB|1|4|U|66
Current chains
- Chain 4
- Z-site tRNA
Nearby chains
- Chain o
- 60S ribosomal protein L36a
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